Research

Impact Areas

Lead

Aude Oliva

Research Group

Computational Connectomics Group

Our group’s goal is to create, based on such microscopic connectivity and functional data, new mathematical models explaining how neural tissue computes.

Nir Shavit

Leads

Nir Shavit

Research Areas

Impact Areas

Lead

Nir Shavit

Research Group

Computation and Biology

Our lab focuses on designing algorithms to gain biological insights from advances in automated data collection and the subsequent large data sets drawn from them.

Bonnie Berger

Leads

Bonnie Berger

Research Areas

Impact Areas

Data-Driven Inference Group

Lead

Bonnie Berger

4 People Results matching all criteria

Azim Dehghani Amirabad

Postdoctoral Associate

Machine learning, Bioinformatics

E azimd@csail.mit.edu

Machine learning, Bioinformatics

John Guttag

Professor

Machine learning, medicine, data-driven inference

E guttag@csail.mit.edu

T 253-6022

Lead

Hidden Influencers, Risk and Causes of Infection

Predicting Adverse Events Across Changing Electronic Health Record Systems

Machine Learning for Insights in Basketball Strategy

Detecting Voice Misuse to Diagnose Disorders

Member

Systems Community of Research

Machine learning, medicine, data-driven inference

Konstantin Krismer

Graduate Student

E krismer@mit.edu

Member

Computational Genomics Group

13 Group Results

Community of Research

Applied Machine Learning Community of Research

This CoR brings together researchers at CSAIL working across a broad swath of application domains. Within these lie novel and challenging machine learning problems serving science, social science and computer science.

Una-May O'Reilly

Leads

Una-May O'Reilly

Research Areas

Programming Languages & Software Engineering

Impact Areas

Cybersecurity

Lead

Una-May O'Reilly

Research Group

Center for Brains, Minds and Machines

Our main goal is developing a computationally based understanding of human intelligence and establishing an engineering practice based on that understanding.

Tomaso Poggio

Leads

Tomaso Poggio

Research Areas

Impact Areas

Lead

Tomaso Poggio

Research Group

Clinical Decision-Making Group

We focus on furthering the application of technology and artificial intelligence in medicine and health-care.

+10

Peter Szolovits

Leads

Peter Szolovits

Research Areas

Impact Areas

Cybersecurity

Manufacturing

Lead

Peter Szolovits

+10

Peter Szolovits

Research Group

Computation and Biology

Our lab focuses on designing algorithms to gain biological insights from advances in automated data collection and the subsequent large data sets drawn from them.

Bonnie Berger

Leads

Bonnie Berger

Research Areas

Impact Areas

Lead

Bonnie Berger

Research Group

Computational Biology Group

We seek to understand the mechanistic basis of human disease, using a combination of computational and experimental techniques.

Manolis Kellis

Leads

Manolis Kellis

Research Areas

Impact Areas

Lead

Manolis Kellis

Research Group

Computational Cognitive Science Group

We study the computational basis of human learning and inference.

Joshua Tenenbaum

Leads

Joshua Tenenbaum

Research Areas

Impact Areas

Lead

Joshua Tenenbaum

Research Group

Computational Connectomics Group

Our group’s goal is to create, based on such microscopic connectivity and functional data, new mathematical models explaining how neural tissue computes.

Nir Shavit

Leads

Nir Shavit

Research Areas

Impact Areas

Lead

Nir Shavit

Research Group

Computational Genomics Group

We develop new machine learning techniques and algorithms to model the transcriptional regulatory networks that control gene expression programs in living cells.

Dave Gifford

Leads

Dave Gifford

Research Areas

Impact Areas

Lead

Dave Gifford

Research Group

Computational Perception & Cognition

We combine methods from computer science, neuroscience and cognitive science to explain and model how perception and cognition are realized in human and machine.

Aude Oliva

Leads

Aude Oliva

Research Areas

Impact Areas

Lead

Aude Oliva

Research Group

Medical Vision Group

We develop new algorithms for medical image analysis and visualization of medical imagery.

Polina Golland

Leads

Polina Golland

Research Areas

Graphics & Vision

Impact Areas

Lead

Polina Golland

Community of Research

Theory of Computation Community of Research

The goal of the Theory of Computation CoR is to study the fundamental strengths and limits of computation as well as how these interact with mathematics, computer science, and other disciplines.

+20

Costis Daskalakis

Leads

Costis Daskalakis

Research Areas

Programming Languages & Software Engineering

Security & Cryptography

Impact Areas

Cybersecurity

Lead

Costis Daskalakis

+20

Costis Daskalakis

Research Group

Tidor Lab

We focus on the analysis of complex biological systems at both the molecular level and the systems level.

Bruce Tidor

Leads

Bruce Tidor

Research Areas

Systems & Networking

Impact Areas

Lead

Bruce Tidor

Research Group

Weiss Laboratory for Synthetic Biology

The Weiss Lab seeks to create integrated biological systems capable of autonomously performing useful tasks, and to elucidate the design principles underlying complex phenotypes.

Leads

Research Areas

Systems & Networking

Impact Areas

Weiss Laboratory for Synthetic Biology

11 Project Results

Project

Artificial tissue homeostasis

In order to be able to design synthetic organs that function autonomously, we will need to engineer artificial tissue homeostasis. To control the size of these artificial tissues, two major mechanisms will have to be engineered.

Leads

Research Areas

Impact Areas

Project

Clinical Intervention Prediction with Neural Networks

Applied Machine Learning Community of Research

Integrating multi-modal clinical data and using recurrent and convolution neural networks to predict when patients will need important interventions.

Leads

Research Areas

Impact Areas

Project

Drug Target Identification Via Computational Modeling

Tidor Lab

We use computational models of biological pathways in disease to estimate the range of possible responses to various hypothetical drugs, given patient variability and limited pathway-relevant data.

Leads

Research Areas

Impact Areas

Weiss Laboratory for Synthetic Biology

Project

Flexible cellular platforms for reconfigurable biocircuits

Existing methods for cloning and recombination of DNA enable construction of arbitrary sequences. However, the sequential nature of these techniques makes them time-consuming and expensive. Furthermore, while the transformation of an existing plasmid into a host strain can be reliable when a selection marker is used, there are many current limitations: the number of different plasmids that can be co-transformed is limited by the choice of markers and compatible origins of replication; plasmids are less stable than chromosomal DNA and are difficult to maintain indefinitely without mutation; and cistronic interactions cannot be designed since each new nucleotide sequence added is on an unconnected DNA molecule. To overcome these limitations, we are designing reconfigurable chromosomes consisting of both fixed and variable regions. While the fixed region is carefully optimized and tuned ahead of time, the variable region can be modified in the field, at the point-of-use, leading to rapid and on-demand realization of novel biocircuits with many different phenotypes.

Leads

Research Areas

Impact Areas

Project

Metagenomic Binning Through Low-Density Hashing

Our goal is to develop better metagenomic binning by origin species of fragments of sequenced environmental DNA.

Bonnie Berger

Leads

Bonnie Berger

Research Areas

Impact Areas

Bonnie Berger

Project

Population-level Tumor Growth Inhibition Modeling

Tidor Lab

We develop, parameterize, and validate a model for tumor growth inhibition using in vivo mouse data and study the effects of modeling uncertainty and inter-individual variability on drug candidate efficacy predictions.

Leads

Research Areas

Impact Areas

Computational Connectomics Group

Project

Reconstructing Neural Circuits from Mammalian Brain

Theory of Computation Community of Research

We develop algorithms, systems and software architectures for automating reconstruction of accurate representations of neural tissue structures, such as nanometer-scale neurons' morphology and synaptic connections in the mammalian cortex.

Yaron Meirovitch

Nir Shavit

Leads

Yaron Meirovitch

Nir Shavit

Research Areas

Systems & Networking

Impact Areas

Clinical Decision-Making Group

Yaron Meirovitch

Nir Shavit

Project

Semi-Supervised Regression with Cycle Wasserstein Regression GANs

Using adversarial signals and a cycle-consistency based regularization, we can supplement paired regression tasks with unpaired data to improve regression performance.

Leads

Research Areas

Impact Areas

Project

Structure-based Inhibitor Design Against ZIKV Protease

Tidor Lab

This project uses computational biology and chemistry tools to design a pharmaceutical to combat the Zika Virus.

Leads

Research Areas

Impact Areas

Theory of Computation Community of Research

Project

Towards Context-Aware Functional Genomics

Computation and Biology

We aim to develop a context-aware data-driven functional genomics framework that can characterize tissue-specific gene representations, provide context-aware genotype to phenotype mapping, and enable network-based exploration of disease genetics.

Bonnie Berger

Leads

Bonnie Berger

Research Areas

Impact Areas

Clinical Decision-Making Group

Bonnie Berger

Project

Using Clinical Domain Knowledge for Processing Physiological Data

Using medical knowledge to improve learned representations of patient health trajectories.

Leads

Research Areas

Impact Areas

Covering All K-mers Using Joker Characters

9 People Results

Leandro Agudelo

Research Scientist

Systems Genomics, CompBio, Topological Integrative Biology, Biology

E lagudelo@csail.mit.edu

Systems Genomics, CompBio, Topological Integrative Biology, Biology

PI
Core/Dual

Bonnie Berger

Professor

Computational biology, genomics

E bab@csail.mit.edu

T 253-1827

Lead

Towards Context-Aware Functional Genomics

Metagenomic Binning Through Low-Density Hashing

Computation and Biology

Member

Computation Structures Group

Theory of Computation Community of Research

Applied Machine Learning Community of Research

Computational biology, genomics

Azim Dehghani Amirabad

Postdoctoral Associate

Machine learning, Bioinformatics

E azimd@csail.mit.edu

Machine learning, Bioinformatics

Barış Ekim

Graduate Student

E ekim@csail.mit.edu

PI
Core/Dual

John Guttag

Professor

Machine learning, medicine, data-driven inference

E guttag@csail.mit.edu

T 253-6022

Lead

Data-Driven Inference Group

Hidden Influencers, Risk and Causes of Infection

Predicting Adverse Events Across Changing Electronic Health Record Systems

Machine Learning for Insights in Basketball Strategy

Detecting Voice Misuse to Diagnose Disorders

Member

Systems Community of Research

Machine learning, medicine, data-driven inference

Konstantin Krismer

Graduate Student

E krismer@mit.edu

Member

Computational Genomics Group

Samuel Sledzieski

Graduate Student

E samsl@csail.mit.edu

Joshua Tenenbaum

Professor

Computational cognitive science, machine learning

E jbt@csail.mit.edu

T 452-2010

RM 46-4015

Lead

Computational Cognitive Science Group

Member

Center for Brains, Minds and Machines

Single-Image 3D Interpreter Network

3D Generative Adversarial Networks

Embodied Intelligence Community of Research